PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000697.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 221aa    MW: 24918.7 Da    PI: 4.6449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000697.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1885135255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Itr_sc000697.1_g00021.1  85 PYRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFSMRG 135
                              69*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.06485143IPR001471AP2/ERF domain
SMARTSM003805.5E-3785149IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2285145IPR016177DNA-binding domain
CDDcd000182.63E-1986145No hitNo description
PfamPF008473.1E-1386135IPR001471AP2/ERF domain
PRINTSPR003674.5E-108697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3086143IPR001471AP2/ERF domain
PRINTSPR003674.5E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDSSSSSSSF YLQNSDFSFE TPEFFQWDYR SFDASLPFNV NDSEEMLLFG VLAEAAQETS  60
ETNSSDTIVV KEEEVTSEES KKEKPYRGVR RRPWGKFAAE IRDSTRNGIR VWLGTFDSAE  120
AAALAYDQAA FSMRGSAAIL NFPVDTVRES LREMRCTVEE GCSPVMALKK KHSIRKKSCK  180
KSCNNREIKV ENLLVFEDLG ADYLEQLLSS STSISTSTNP W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2884144161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093429.19e-81Ethylene-responsive transcription factor 1B
SwissprotQ8LDC82e-74ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0K0NLE49e-88A0A0K0NLE4_CARPA; AP2/ERF transcription factor ERF7
STRINGPGSC0003DMT4000443791e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-52ethylene response factor 1